publications

# Contributed equally * Corresponding author

Published Papers

2022

  1. NM2022.png
    Single-cell measurements and modelling reveal substantial organic carbon acquisition by Prochlorococcus
    Zhen Wu#, Dikla Aharonovich#, Dalit Roth-Rosenberg, and 9 more authors
    Nature Microbiology, 2022
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  2. NG2022.png
    Imbalance of global nutrient cycles exacerbated by the greater retention of phosphorus over nitrogen in lakes
    Zhen Wu, Jincheng Li, Yanxin Sun, and 12 more authors
    Nature Geoscience, 2022
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  3. PI.gif
    PlanktonIndividuals.jl: A GPU supported individual-based phytoplankton life cycle model
    Zhen Wu, and Gael Forget
    Journal of Open Source Software, 2022
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  4. PLOS2022.png
    A Bayesian approach to modeling phytoplankton population dynamics from size distribution time series
    Jann Paul Mattern#, Kristof Glauninger#, Gregory L Britten, and 6 more authors
    PLOS Computational Biology, 2022
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2021

  1. GBC2021.png
    Modeling Photosynthesis and Exudation in Subtropical Oceans
    Zhen Wu*, Stephanie Dutkiewicz, Oliver Jahn, and 3 more authors
    Global Biogeochemical Cycles, 2021
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2020

  1. EM2020.jpeg
    Seasonal algal blooms support sediment release of phosphorus via positive feedback in a eutrophic lake: Insights from a nutrient flux tracking modeling
    Rui Zou#, Zhen Wu#, Lei Zhao, and 4 more authors
    Ecological Modelling, 2020
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  2. AS2020.jpg
    What maintains seasonal nitrogen limitation in hyper-eutrophic Lake Dianchi? Insights from stoichiometric three-dimensional numerical modeling
    Zhen Wu, Rui Zou, Qingsong Jiang, and 4 more authors
    Aquatic Sciences, 2020
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2019

  1. Seasonal pattern of nutrient limitation in a eutrophic lake and quantitative analysis of the impacts from internal nutrient cycling
    Mengzhu Wang, Xiwen Xu, Zhen Wu, and 8 more authors
    Environmental science & technology, 2019
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  2. Denitrification and the controlling factors in Yunnan Plateau Lakes (China): exploring the role of enhanced internal nitrogen cycling by algal blooms
    Sifeng Wu, Zhen Wu, Zhongyao Liang, and 2 more authors
    Journal of Environmental Sciences, 2019
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2018

  1. Identification of watershed priority management areas under water quality constraints: a simulation-optimization approach with ideal load reduction
    Feifei Dong, Yong Liu*, Zhen Wu, and 2 more authors
    Journal of Hydrology, 2018
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  2. Seasonal and spatial dynamics of denitrification rate and denitrifier community in constructed wetland treating polluted river water
    Bingxin Li, Jianfei Chen, Zhen Wu, and 3 more authors
    International Biodeterioration & Biodegradation, 2018
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  3. Nitrifying activity and ammonia-oxidizing microorganisms in a constructed wetland treating polluted surface water
    Bingxin Li, Yuyin Yang, Jianfei Chen, and 3 more authors
    Science of the Total Environment, 2018
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2017

  1. WR2017.jpg
    Internal cycling, not external loading, decides the nutrient limitation in eutrophic lake: A dynamic model with temporal Bayesian hierarchical inference
    Zhen Wu, Yong Liu*, Zhongyao Liang, and 2 more authors
    Water Research, 2017
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  2. Spatio-temporal shifts in the archaeal community of a constructed wetland treating river water
    Bingxin Li, Huili Chen, Ningning Li, and 4 more authors
    Science of the Total Environment, 2017
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  3. Vertical profiles of water and sediment denitrifiers in two plateau freshwater lakes
    Guozhu Mao, Ling Chen, Yuyin Yang, and 4 more authors
    Applied microbiology and biotechnology, 2017
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2016

  1. Ammonia-oxidizing archaea and bacteria in water columns and sediments of a highly eutrophic plateau freshwater lake
    Yuyin Yang, Ningning Li, Qun Zhao, and 4 more authors
    Environmental Science and Pollution Research, 2016
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  2. Spatiotemporal variation of planktonic and sediment bacterial assemblages in two plateau freshwater lakes at different trophic status
    Yu Dai, Yuyin Yang, Zhen Wu, and 3 more authors
    Applied Microbiology and Biotechnology, 2016
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  3. Distribution of bacterial communities across plateau freshwater lake and upslope soils
    Yihui Chen, Yu Dai, Yilin Wang, and 3 more authors
    Journal of Environmental Sciences, 2016
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  4. Temporal and spatial dynamics of archaeal communities in two freshwater lakes at different trophic status
    Yuyin Yang, Yu Dai, Zhen Wu, and 2 more authors
    Frontiers in microbiology, 2016
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2015

  1. Methanotrophic community abundance and composition in plateau soils with different plant species and plantation ways
    Yu Dai, Zhen Wu, Shuguang Xie*, and 1 more author
    Applied microbiology and biotechnology, 2015
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  2. Distribution of ammonia-oxidizing archaea and bacteria in plateau soils across different land use types
    Jingxu Zhang, Yu Dai, Yilin Wang, and 3 more authors
    Applied microbiology and biotechnology, 2015
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  3. Activity, abundance and structure of ammonia-oxidizing microorganisms in plateau soils
    Yu Dai, Zhen Wu, Qiheng Zhou, and 4 more authors
    Research in microbiology, 2015
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Presentation & Talks

2024

  1. Effects of thermal mortality on microbial community dynamics
    Zhen Wu, John Casey, and Gael Forget
    In Ocean Sciences Meeting, 2024

2021

  1. Evaluating the implications of mixotrophy in Prochlorococcus using an Individual-based Modeling approach
    Zhen Wu, Daniel Sher, Osnat Weissberg, and 1 more author
    In ASLO Aquatic Sciences Meeting, 2021

2020

  1. Modeling photosynthesis and exudation of DOM in subtropical oceans
    Zhen Wu, Michael J Follows, and Stephanie Dutkiewicz
    In Ocean Sciences Meeting, 2020